Dear Michael, pianoscope allows to resume an aborted pitch raise for four days after it has been started. This is to support leaving pitch-raise mode and to re-enter it for whatever purpose.
But having the ability to re-enter an interrupted pitch-raise should have no downsides for you. If you want to start a fresh pitch-raise with a new pre-measurement you can do so at any time.
So to my mind, there is nothing to worry about with the behavior you described.